About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12162499_12166505_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12162499 - 12166505
Intron Length:
4007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGGCTGTGGAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCAGCAG
U12 Branch Point Sequence:
TGGCTGTGGAGA
Flanking Amino Acid:
DMEAYLPKKNGDHSSCLCCA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
36
-0.8
1.5
37
40.7
Major PPT
44.2
-0.3
1.8
45
45.8
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
37.1
-1
2.2
44.37
38.1

Associated Gene:

Gene:
TMEM120B
Ensembl Gene ID:
ENSAPLG00000004954
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045059
12158404 - 12166560
8157