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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12163531_12164143_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12163531 - 12164143
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
GATGTGTGACTT
Flanking Amino Acid:
VNVTLLSNQAKFAYKDEYEK
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
38.8
-0.7
2.2
53.75
42.1

Associated Gene:

Gene:
TMEM120B
Ensembl Gene ID:
ENSAPLG00000004954
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005120
12158404 - 12165426
7023