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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12164240_12165248_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12164240 - 12165248
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
AVACRFILHYRVTDEVFNFL
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.6
0.82
0.8
84.3
29.1
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
TMEM120B
Ensembl Gene ID:
ENSAPLG00000004954
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005120
12158404 - 12165426
7023