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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12173803_12176005_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12173803 - 12176005
Intron Length:
2203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTTCTTACCT
Flanking Amino Acid:
SKQEPITYNQGEAACQQINA
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.7
0.78
0.8
76.7
37.4
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
72.5
0.78
1.6
86.99
39.2

Associated Gene:

Gene:
RHOF
Ensembl Gene ID:
ENSAPLG00000005211
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005378
12173638 - 12185084
11447