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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12176141_12176886_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12176141 - 12176886
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
GTTTTTCTACCA
Flanking Amino Acid:
PTSYDNVAVKWYPEVNHFCR
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
77
0.61
0.9
75.9
32.9
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
50
-0
1.9
68.01
38.6

Associated Gene:

Gene:
RHOF
Ensembl Gene ID:
ENSAPLG00000005211
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005378
12173638 - 12185084
11447