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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12176997_12184008_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12176997 - 12184008
Intron Length:
7012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCG
5'SS Class:
major
3'SS Sequence:
CTCTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTTAT
U12 Branch Point Sequence:
TTATCCACAACG
Flanking Amino Acid:
EVVLNLYDTAGQEDYDRLRP
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
61.4
42.5
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
79
0.65
0.9
75.9
38
Minor 5ss
35.1
-1.7
3.5
47.6
48
Minor BPS
59
0.15
1.9
70.19
42.3

Associated Gene:

Gene:
RHOF
Ensembl Gene ID:
ENSAPLG00000005211
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005378
12173638 - 12185084
11447