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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12184097_12184400_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12184097 - 12184400
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
GTTCCCTAAACA
Flanking Amino Acid:
MVYAKGAFPEQYAPSVFEKY
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
85.4
0.8
0.7
80.2
25.1
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
68.6
0.58
1.7
77.93
38.4

Associated Gene:

Gene:
RHOF
Ensembl Gene ID:
ENSAPLG00000005211
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005378
12173638 - 12185084
11447