About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12201599_12202001_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12201599 - 12202001
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
CATTTCCCAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
GTGTTTCCAATC
Flanking Amino Acid:
PEDHGKKQSSILQFDTCVCV
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
62.5
43.8
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
72.4
0.5
0.9
67.6
33.4
Minor 5ss
37.7
-1.4
3.2
47.8
42.2
Minor BPS
45.8
-0.3
1.8
55.28
37.4

Associated Gene:

Gene:
SETD1B
Ensembl Gene ID:
ENSAPLG00000005217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005412
12201526 - 12242533
41008