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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12227768_12231597_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12227768 - 12231597
Intron Length:
3830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTCTTTTAAAG
Flanking Amino Acid:
WWDKKERLAKASLTPVKSGG
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72.3
40.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
45.1
-0.5
3.2
65.3
46.1
Minor BPS
51.8
-0
1.5
52.95
42.3

Associated Gene:

Gene:
SETD1B
Ensembl Gene ID:
ENSAPLG00000005217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005412
12201526 - 12242533
41008