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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12232487_12233664_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12232487 - 12233664
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCAAA
5'SS Class:
major
3'SS Sequence:
TTTTGCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAG
U12 Branch Point Sequence:
TTGAGGTCAATT
Flanking Amino Acid:
PSTSVDDEDEESERDRDASD
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
68
38.6
Major BPS
63.6
0.34
1.5
63.1
44.4
Major PPT
81.6
0.71
0.8
73.7
36.9
Minor 5ss
41.1
-1
2.5
48.9
47
Minor BPS
42.5
-0.4
2.5
64.5
46.2

Associated Gene:

Gene:
SETD1B
Ensembl Gene ID:
ENSAPLG00000005217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005412
12201526 - 12242533
41008