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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12234290_12234727_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12234290 - 12234727
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGTCACTAAAT
Flanking Amino Acid:
DKEEEQDSEEEDVASPSSSK
Intron Amino Acid Position:
1093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
77.9
38.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.9
0.79
0.7
80.9
24.3
Minor 5ss
40.6
-1
2.9
49.4
46.6
Minor BPS
50.4
0.09
2
74.19
41.8

Associated Gene:

Gene:
SETD1B
Ensembl Gene ID:
ENSAPLG00000005217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005412
12201526 - 12242533
41008