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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12239821_12240106_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12239821 - 12240106
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCAGCTCTGATC
Flanking Amino Acid:
FAEEPPADTQGMSIPAQPHA
Intron Amino Acid Position:
1827

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
79
0.72
1
69
38.9
Major PPT
82.5
0.73
0.9
80.5
37
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
46.6
-0.2
1.7
54.21
38.5

Associated Gene:

Gene:
SETD1B
Ensembl Gene ID:
ENSAPLG00000005217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005412
12201526 - 12242533
41008