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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12240239_12240986_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12240239 - 12240986
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGGAT
U12 Branch Point Sequence:
TTTTCTTTGTGC
Flanking Amino Acid:
SDLLKFNQLKFRKKKLKFCK
Intron Amino Acid Position:
1871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
72.3
39.5
Major BPS
56.3
0.16
1.6
57.1
49.4
Major PPT
87.3
0.84
0.8
84.2
30.7
Minor 5ss
33.1
-1.9
3.2
43.3
44.4
Minor BPS
44.5
-0.4
3.6
73.02
38.9

Associated Gene:

Gene:
SETD1B
Ensembl Gene ID:
ENSAPLG00000005217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005412
12201526 - 12242533
41008