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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12241107_12241480_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12241107 - 12241480
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GGGTTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTGACAATAAGC
Flanking Amino Acid:
IEYVGQNIRQVIADMREKRY
Intron Amino Acid Position:
1911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
71.8
0.49
0.9
66.2
40.8
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
42.9
-0.5
2.1
53.13
44

Associated Gene:

Gene:
SETD1B
Ensembl Gene ID:
ENSAPLG00000005217
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005412
12201526 - 12242533
41008