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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12249363_12249483_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12249363 - 12249483
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
TGCCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
ATCTTCCTATTG
Flanking Amino Acid:
KVKENIDKLEELKILVDFDE
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
81
0.7
0.8
72.8
37.5
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
46.6
-0.3
1.9
53.59
42

Associated Gene:

Gene:
HPD
Ensembl Gene ID:
ENSAPLG00000005747
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005945
12248989 - 12252734
3746