Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12249607_12249888_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12249607 - 12249888

Intron Length:

282

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CCCCGCCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAG

U12 Branch Point Sequence:

CCACGCTCAGCT

Flanking Amino Acid:

ALNTSDIISAITNLKQRGMQ

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

69.7

35.1

Major BPS

47.4

-0.1

1.6

54.7

43.1

Major PPT

69.1

0.43

0.8

29.2

Minor 5ss

-2.4

3.1

36.8

40.4

Minor BPS

41.8

-0.5

2.1

54.42

46.7

Associated Gene:

Gene:

HPD

Ensembl Gene ID:

ENSAPLG00000005747

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005945

12248989 - 12252734

3746