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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12249961_12250088_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12249961 - 12250088
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGAGAT
U12 Branch Point Sequence:
TTTTCCCCACAG
Flanking Amino Acid:
AFGKKKSQIQEYIDYYGGAG
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
48.5
-0
1.4
46.4
47
Major PPT
79.9
0.67
0.8
73.8
30.6
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
45.8
-0.4
2.2
62
45.2

Associated Gene:

Gene:
HPD
Ensembl Gene ID:
ENSAPLG00000005747
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005945
12248989 - 12252734
3746