Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12250252_12250395_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12250252 - 12250395

Intron Length:

144

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAGCG

5'SS Class:

strong_major

3'SS Sequence:

TGTGGCCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTCCAC

U12 Branch Point Sequence:

GGGGCTTCCACG

Flanking Amino Acid:

PDLQMVPVADWYQKNLLFHR

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

65.2

Major BPS

55.1

0.13

1.3

67.8

38.2

Major PPT

61.3

0.25

1.1

55.1

41.4

Minor 5ss

30.9

-2.2

3.3

36.7

41.4

Minor BPS

41.1

-0.8

40.57

43.7

Associated Gene:

Gene:

HPD

Ensembl Gene ID:

ENSAPLG00000005747

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005945

12248989 - 12252734

3746