About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12250664_12250776_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12250664 - 12250776
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGCAC
U12 Branch Point Sequence:
GGGCACGGAGCC
Flanking Amino Acid:
GKVKFAVIQTYGDTTHTLIE
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
44
-0.3
1.5
48.8
46.3
Major PPT
71.9
0.49
0.9
64.9
30.7
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
34.8
-1.1
2.1
39.79
38.4

Associated Gene:

Gene:
HPD
Ensembl Gene ID:
ENSAPLG00000005747
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005945
12248989 - 12252734
3746