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Intron Name: Anas_platyrhynchos_platyrhynchos_16_12251122_12251334_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12251122 - 12251334

Intron Length:

213

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGACAAAG

5'SS Class:

major

3'SS Sequence:

GGGTGGCGTGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACCGGAG

U12 Branch Point Sequence:

TTTTGGGGGACC

Flanking Amino Acid:

VSHVIKQDKVRIPAHAHRLL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

1.2

41.7

Major BPS

38.6

-0.7

1.5

30.7

35.3

Major PPT

55.4

0.12

1.1

46.5

45.9

Minor 5ss

33.4

-1.9

2.9

40.8

45.2

Minor BPS

38.7

-0.9

2.9

62.06

43.9

Associated Gene:

Gene:

HPD

Ensembl Gene ID:

ENSAPLG00000005747

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005945

12248989 - 12252734

3746