Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12251445_12251988_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12251445 - 12251988

Intron Length:

544

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGGC

5'SS Class:

major

3'SS Sequence:

GCCTCCATGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTGCAC

U12 Branch Point Sequence:

CGTGGTTTACCC

Flanking Amino Acid:

ITFWVGNAKQAASYYCNKMG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

65.2

40.3

Major BPS

52.8

0.07

1.4

66.7

39.9

Major PPT

63.2

0.3

37.1

Minor 5ss

29.4

-2.4

3.5

41.3

45.4

Minor BPS

44.8

-0.4

2.1

53.83

44.6

Associated Gene:

Gene:

HPD

Ensembl Gene ID:

ENSAPLG00000005747

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005945

12248989 - 12252734

3746