About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12252052_12252704_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12252052 - 12252704
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAAAC
U12 Branch Point Sequence:
GCAGCCAGGACA
Flanking Amino Acid:
QTTYTDKGEKPLRGRFIHFH
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
46.8
-0.2
1.1
50.9
32
Major PPT
75.8
0.58
0.7
73.4
24.9
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
43.8
-0.4
1.8
49.71
40.9

Associated Gene:

Gene:
HPD
Ensembl Gene ID:
ENSAPLG00000005747
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005945
12248989 - 12252734
3746