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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12253978_12254087_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12253978 - 12254087
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
TGTCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
CCCCCCTGAGCG
Flanking Amino Acid:
IRACYELLRDSGVGPDEPLV
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.3
62.3
43.9
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
72.8
0.51
0.8
66.2
30
Minor 5ss
35.6
-1.6
2.8
40.4
38.7
Minor BPS
45.7
-0.4
1.8
45.42
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029451
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033787
12253864 - 12256230
2367