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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12254703_12255193_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12254703 - 12255193
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TCTCTCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
AGATGTTCAGCT
Flanking Amino Acid:
VTPESPASVSGLQVDDEIVE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
62.7
43.4
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
79.9
0.67
0.9
72.6
37.6
Minor 5ss
29.6
-2.3
2.7
34.6
40.9
Minor BPS
43.9
-0.3
2.1
60.4
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029451
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033787
12253864 - 12256230
2367