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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12255296_12255804_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12255296 - 12255804
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
CCCCCCTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CCTTTTTTATTT
Flanking Amino Acid:
IATVVQHSEGRPLSVTVIRN
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.8
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.6
0.51
0.8
63.8
31.2
Minor 5ss
41.6
-0.9
3
47.2
48.2
Minor BPS
57.3
0.31
1.6
70.13
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029451
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033787
12253864 - 12256230
2367