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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12260071_12260408_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12260071 - 12260408
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTGTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACAAAC
U12 Branch Point Sequence:
GAAGCCACAAAC
Flanking Amino Acid:
LVTISAGRAQKVCVWRGTAP
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
48.9
-0
0.9
54.6
27.1
Major PPT
67
0.38
1
62.8
37.3
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
42.5
-0.5
1.9
48.55
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006322
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006575
12258711 - 12265068
6358