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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12260490_12260625_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12260490 - 12260625
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGACATTAATG
Flanking Amino Acid:
TELRPEFGLQDFVVFNPQNP
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.9
0.79
0.8
82.3
32.9
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
60.2
0.18
1.7
65.41
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006322
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006575
12258711 - 12265068
6358