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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12260704_12261033_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12260704 - 12261033
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTGTCCTCACAG
Flanking Amino Acid:
SKTQVIFYLWSDASLQYSTP
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
43.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
72.1
0.5
0.8
64.9
30.8
Minor 5ss
29.2
-2.4
2.5
25.2
36.6
Minor BPS
46.6
-0.4
2
52.59
47.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006322
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006575
12258711 - 12265068
6358