About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12261079_12261338_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12261079 - 12261338
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAC
U12 Branch Point Sequence:
GCAGGACTAACT
Flanking Amino Acid:
QYSTPPLTKQTFNSVVGHFS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
59.1
0.23
1.2
61.6
34.1
Major PPT
79.4
0.66
0.8
73.1
31.8
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
40.3
-0.6
2.2
55.42
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006322
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006575
12258711 - 12265068
6358