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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12261557_12262089_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12261557 - 12262089
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CGAGTCCTAATG
Flanking Amino Acid:
SSITVLMVLESCIVTGDVKG
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
78.2
0.63
0.7
69.1
31.5
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
45.2
-0.5
1.8
44.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006322
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006575
12258711 - 12265068
6358