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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12264551_12264825_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12264551 - 12264825
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
GTCTTCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCAGAT
U12 Branch Point Sequence:
GCTTCCTTGTCT
Flanking Amino Acid:
LLSLGEDRQLVEYDLSSSSK
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
37.6
Major BPS
46.5
-0.2
1.3
40.4
42.3
Major PPT
79.2
0.66
0.8
70
36.6
Minor 5ss
45.8
-0.4
2.5
55.3
44.2
Minor BPS
48.9
-0
3.5
79.87
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006322
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006575
12258711 - 12265068
6358