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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12265913_12267888_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12265913 - 12267888
Intron Length:
1976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCCATGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAT
U12 Branch Point Sequence:
CCTTCCTGCACC
Flanking Amino Acid:
RTVLKWEVNLNALEAAASLG
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
57.1
0.18
1.4
66.4
42.2
Major PPT
62.4
0.28
1
54.6
40.1
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
55.5
0.16
2
66.78
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030755
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025511
12265362 - 12273660
8299