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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12271286_12273511_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12271286 - 12273511
Intron Length:
2226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TACTGCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTGTTGTTACTG
Flanking Amino Acid:
GDLLLLLQCRGAAALTEEEI
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
75.6
0.58
0.9
66
40.6
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
46.9
-0.3
2.3
57.85
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030755
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025511
12265362 - 12273660
8299