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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12275099_12282886_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12275099 - 12282886
Intron Length:
7788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TGTAATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACTTTAACT
Flanking Amino Acid:
VMAAIEKVRKWEKKWVTVGD
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
55.8
43.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.7
0.58
0.9
69.9
41
Minor 5ss
30.4
-2.2
3.3
34.5
43.8
Minor BPS
80.1
1.02
1.1
89.8
33.9

Associated Gene:

Gene:
BCL7A
Ensembl Gene ID:
ENSAPLG00000006396
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006629
12275007 - 12291293
16287