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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12282969_12285954_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12282969 - 12285954
Intron Length:
2986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTGTGGTACCT
Flanking Amino Acid:
VPVTEPKVDDKNKNKKKGKD
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
41.7
-0.5
2.7
70.32
47.1

Associated Gene:

Gene:
BCL7A
Ensembl Gene ID:
ENSAPLG00000006396
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006629
12275007 - 12291293
16287