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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12286052_12287969_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12286052 - 12287969
Intron Length:
1918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTGTTCTAAACT
Flanking Amino Acid:
SSSPGMMDMHDDNSNQSSIA
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.1
0.61
0.9
72.6
36.4
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
66.2
0.59
1.7
80.01
42.1

Associated Gene:

Gene:
BCL7A
Ensembl Gene ID:
ENSAPLG00000006396
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006629
12275007 - 12291293
16287