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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12288138_12290115_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12288138 - 12290115
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTCTTGAAAT
Flanking Amino Acid:
TEAKEQPGSEDTSDEQNSQS
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
72.3
0.5
1
67.2
42.5
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
69
0.68
1.5
84.89
34.8

Associated Gene:

Gene:
BCL7A
Ensembl Gene ID:
ENSAPLG00000006396
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006629
12275007 - 12291293
16287