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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12321138_12321495_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12321138 - 12321495
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCAGAT
U12 Branch Point Sequence:
TTCTGTTGAGCA
Flanking Amino Acid:
NAIWRAWYMQYLEKRKNPVC
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
71.8
38.2
Major BPS
61.8
0.29
1.1
58.3
39.2
Major PPT
89.8
0.89
0.6
88
22
Minor 5ss
39
-1.2
2.7
48.2
40.4
Minor BPS
47.3
-0.2
2.1
63.68
43.1

Associated Gene:

Gene:
MLXIP
Ensembl Gene ID:
ENSAPLG00000006465
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006730
12298454 - 12339471
41018