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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12324726_12325316_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12324726 - 12325316
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
LVSWPNPREIAHLGNADMIQ
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.8
83.1
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
83.2
0.75
0.8
76.2
37.6
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
MLXIP
Ensembl Gene ID:
ENSAPLG00000006465
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006730
12298454 - 12339471
41018