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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12325407_12326292_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12325407 - 12326292
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAA
U12 Branch Point Sequence:
AGAAAATTAAGA
Flanking Amino Acid:
DFMDTFEPFQDLFTPSRSSN
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79
35.3
Major BPS
58.9
0.22
1
50.1
34.6
Major PPT
86.8
0.83
0.9
84.6
36
Minor 5ss
37.6
-1.4
3
44.8
42.9
Minor BPS
43.4
-0.5
2
51.09
39.2

Associated Gene:

Gene:
MLXIP
Ensembl Gene ID:
ENSAPLG00000006465
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006730
12298454 - 12339471
41018