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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12327202_12329431_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12327202 - 12329431
Intron Length:
2230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTAACTAAATT
Flanking Amino Acid:
LVLKNAFITPAAFQGQSRAV
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.6
0.76
0.8
81.3
36.4
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
53.7
0.2
1.9
73.4
43.7

Associated Gene:

Gene:
MLXIP
Ensembl Gene ID:
ENSAPLG00000006465
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006730
12298454 - 12339471
41018