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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12329554_12330245_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12329554 - 12330245
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
GTGCTGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCTT
U12 Branch Point Sequence:
TTTCTCTTTGCT
Flanking Amino Acid:
VAIAPAGIARAPGVTEFRSN
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
63.3
42.8
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
70.3
0.46
1
61
44.6
Minor 5ss
32.9
-2
3.1
36.1
41.8
Minor BPS
44.8
-0.3
3.6
81.17
40.3

Associated Gene:

Gene:
MLXIP
Ensembl Gene ID:
ENSAPLG00000006465
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006730
12298454 - 12339471
41018