Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12330492_12333157_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12330492 - 12333157

Intron Length:

2666

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTTAGACAG

5'SS Class:

major

3'SS Sequence:

TAAGTCAACAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

AATGCCATAAGT

Flanking Amino Acid:

SPTHSSTFPSVMLNVNSRNN

Intron Amino Acid Position:

682

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.1

0.4

1.2

43.8

Major BPS

74.5

0.61

79.6

29.1

Major PPT

-0

1.1

46.2

39.2

Minor 5ss

28.1

-2.5

2.8

33.3

41.3

Minor BPS

51.8

0.13

72.63

43.8

Associated Gene:

Gene:

MLXIP

Ensembl Gene ID:

ENSAPLG00000006465

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006730

12298454 - 12339471

41018