Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12333338_12335136_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12333338 - 12335136

Intron Length:

1799

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

GTGTTTGGTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCAGAA

U12 Branch Point Sequence:

TGTTCCAGAAAG

Flanking Amino Acid:

NSLVSASSKSISHAITLQKT

Intron Amino Acid Position:

742

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

81.8

31.8

Major BPS

52.4

0.06

1.1

48.9

36.6

Major PPT

65.6

0.35

1.1

58.1

47.3

Minor 5ss

36.5

-1.5

2.7

46.6

41.8

Minor BPS

51.2

-0.1

1.9

64.15

42.6

Associated Gene:

Gene:

MLXIP

Ensembl Gene ID:

ENSAPLG00000006465

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006730

12298454 - 12339471

41018