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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12335265_12336328_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12335265 - 12336328
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGATTT
5'SS Class:
major
3'SS Sequence:
ATCTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GGATTCTGACCT
Flanking Amino Acid:
EEIEELNAAVISCQQQLPAT
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
79.7
28.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
87.1
0.83
0.7
84.9
29.2
Minor 5ss
40.9
-1
3.3
60.9
43.8
Minor BPS
50.1
0.08
1.8
67.22
42.9

Associated Gene:

Gene:
MLXIP
Ensembl Gene ID:
ENSAPLG00000006465
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006730
12298454 - 12339471
41018