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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12353263_12354493_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12353263 - 12354493
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACA|GCAAAACAG
5'SS Class:
weak_major
3'SS Sequence:
CGGGTGCCAAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGCGAC
U12 Branch Point Sequence:
CATCTCCTAGCG
Flanking Amino Acid:
PVAKRRFSYTPENSWMAVPG
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.4
42.7
44.1
Major BPS
46.4
-0.2
1.3
41.8
40.4
Major PPT
43.3
-0.3
1.7
39.3
39.2
Minor 5ss
22.5
-3.2
3.9
35.4
42
Minor BPS
45.1
-0.5
1.9
50.54
43.2

Associated Gene:

Gene:
LRRC43
Ensembl Gene ID:
ENSAPLG00000006735
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006986
12353167 - 12361480
8314