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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12354605_12354699_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12354605 - 12354699
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGGGCT
5'SS Class:
major
3'SS Sequence:
TCCCTCTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GGGTGCTCACTG
Flanking Amino Acid:
RDFPCGLGSWNKSRFSARTS
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
64.6
38.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
77.3
0.61
0.7
72.3
25.8
Minor 5ss
30
-2.3
3.8
38.5
46.7
Minor BPS
40.3
-0.8
2.1
40.75
43.7

Associated Gene:

Gene:
LRRC43
Ensembl Gene ID:
ENSAPLG00000006735
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028026
12353069 - 12361480
8412
ENSAPLT00000026785
12354212 - 12361480
7269
ENSAPLT00000006986
12353167 - 12361480
8314
ENSAPLT00000035406
12353660 - 12360991
7332