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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12357912_12358091_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12357912 - 12358091
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GAGGTGGCCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGGGAT
U12 Branch Point Sequence:
CACTCTGGGATG
Flanking Amino Acid:
GTIVSVVEEKARSLGVPVPA
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
47.6
-0.1
1.5
46.5
47
Major PPT
51.1
0.03
1.1
39
44.4
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
39.7
-0.9
2
38.77
39.3

Associated Gene:

Gene:
LRRC43
Ensembl Gene ID:
ENSAPLG00000006735
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006986
12353167 - 12361480
8314