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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12357928_12358339_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12357928 - 12358339
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCCAGATGA
5'SS Class:
major
3'SS Sequence:
GGGTGTCAGGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTGTCAG
U12 Branch Point Sequence:
TCCTGTGCCAGT
Flanking Amino Acid:
VVEEKVSVWQVFLHPRPLDK
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
52.6
43.7
Major BPS
47.3
-0.1
1.7
57.1
49.4
Major PPT
42.5
-0.4
1.7
39.6
44
Minor 5ss
22
-3.2
3.6
21.9
37
Minor BPS
30.3
-1.4
2.5
46.32
46.3

Associated Gene:

Gene:
LRRC43
Ensembl Gene ID:
ENSAPLG00000006735
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026785
12354212 - 12361480
7269
ENSAPLT00000022233
12354296 - 12361480
7185
ENSAPLT00000035406
12353660 - 12360991
7332
ENSAPLT00000028026
12353069 - 12361480
8412