About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12358146_12358521_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12358146 - 12358521
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTCG
5'SS Class:
major
3'SS Sequence:
CGGTGCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GATCCCATACCG
Flanking Amino Acid:
PAAPAPLSWQGPVPKDKQKQ
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
56.3
43.6
Major BPS
71.2
0.53
1
61
37.5
Major PPT
69.6
0.44
1
61.8
39.9
Minor 5ss
43.2
-0.7
3
57.3
46.9
Minor BPS
47.9
-0.2
2
56.36
44.1

Associated Gene:

Gene:
LRRC43
Ensembl Gene ID:
ENSAPLG00000006735
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006986
12353167 - 12361480
8314